On the Thresher Shark Divemaster Course in Malapascua you get there by flying into Cebu. Cebu is assessable by low cost carrier Cebu Pacific from Manila. At Cebu, you will be picked up by private car and taken to an awaiting boat. Destination Malapascua: an incredible tropical island, famous for its superb diving and laid back Island life.
The drive takes about 2 hours and it pretty stunning, through Rice paddys, tropical jungles and plantations.
This vide tells you a little bit about the transfer and shows you what you can expect when arriving in Malapascua for the first time. Fair warning though, once you arrive you will never want to leave!